DB-TMR

DB-TMR
Release date 1998
Implementation C++
Author Pasquier, C.

DB-TMR contains 40672 transmembrane regions of 9392 transmembrane proteins automatically extracted from the SwissProt database. Each transmembrane segment is described in one record containing:

  • the access code of the sequence containing the segment (ID line),
  • the organism classification (OC lines),
  • the length of the transmembrane region,
  • the direction of the transmembrane when it can be deducted thanks to the keywords 'CYTOPLASMIC' and 'EXTRACELLULAR' of the feature table,
  • the amino-acid letters of the five-residue extension outside the transmembrane for the N and C-terminal side,
  • the amino-acid letters of the residues located inside the transmembrane.
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Claude Pasquier
Researcher in Computer Science / Computational Biology

UniversitĂ© cĂ´te d’Azur, CNRS, I3S Laboratory, Sophia Antipolis

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