2020: transcriptome wide scale dsRNAs analysis.

Data associated with the article:

C Pasquier, S Agnel, A Robichon. Transcriptome-wide-scale-predicted dsRNAs potentially involved in RNA homeostasis are remarkably excluded from genes with no/very low expression in all developmental stages. RNA biology 2020.

Supplementary data

Supplemental Dataset S1: List of potentially targeted mRNAs that we identified by calculation.

Supplemental Dataset S2: List of potential dsRNA heteroduplexes identified between lncRNAs and mRNAs.

Supplemental Dataset S3: List of potential dsRNA heteroduplexes identified between mRNAs and mRNAs.

Supplemental Dataset S4: List of potential dsRNA heteroduplexes identified between introns and mRNAs.

Supplemental Dataset S5: List of genes belonging to the interaction network obtained with a minimal exact match of 20 bases with their Gene Ontology enrichments.

Supplemental Dataset S6: List of genes belonging to the interaction networks obtained with minimal exact matches of 20 and 30 bases with their Gene Ontology enrichments.

Supplemental Dataset S7: p-values of the statistical presence of the genes within the network of dsRNA interaction in the expressed/no expressed genes during 12 development stages.

Supplemental Dataset S8: List of genes belonging to the interaction networks constructed with co-expressed genes at several development stages. The dataset also includes corresponding Gene Ontology enrichments.

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Claude Pasquier
Researcher in Computer Science / Computational Biology

UniversitĂ© cĂ´te d’Azur, CNRS, I3S Laboratory, Sophia Antipolis